Fermentation

Phylogenetic tree of bacteria and archaea, highlighting those that carry out fermentation. Their end products are also highlighted. Figure modified from Hackmann (2024).[1]

Fermentation is a type of anaerobic metabolism which harnesses the redox potential of the reactants to make adenosine triphosphate (ATP) and organic end products..[1][2] Organic molecules, such as glucose or other sugars, are catabolized and reduced by donating their electrons to other organic molecules (cofactors, coenzymes, etc.).[1]

Fermentation is important in several areas of human society. Humans have used fermentation in the production and preservation of food for 13,000 years.[3] It has been associated with health benefits, unique flavor profiles, and making products have better texture. Humans and their livestock also benefit from fermentation from the microbes in the gut that release end products that are subsequently used by the host for energy. Perhaps the most commonly known use for fermentation is at an industrial level to produce commodity chemicals, such as ethanol and lactate. Ethanol is used in a variety of alcoholic beverages (beers, wine, and spirits) while lactate can be neutralized to lactic acid and be used for food preservation, curing agent, or a flavoring agent.[4]

This complex metabolism utilizes a wide variety of substrates and can form nearly 300 different combinations of end products. Every domain of life carries out fermentation: Bacteria, Archaea, and Eukarya. The discovery of new end products and new fermentative organisms suggests that fermentation is more diverse than what has been studied [5]

  1. ^ a b c Hackmann TJ (June 2024). "The vast landscape of carbohydrate fermentation in prokaryotes". FEMS Microbiology Reviews. 48 (4): fuae016. doi:10.1093/femsre/fuae016. PMC 11187502. PMID 38821505.
  2. ^ Hackmann TJ, Zhang B (September 2023). "The phenotype and genotype of fermentative prokaryotes". Science Advances. 9 (39): eadg8687. Bibcode:2023SciA....9G8687H. doi:10.1126/sciadv.adg8687. PMC 10530074. PMID 37756392.
  3. ^ Liu L, Wang J, Rosenberg D, Zhao H, Lengyel G, Nadel D (2018-10-01). "Fermented beverage and food storage in 13,000 y-old stone mortars at Raqefet Cave, Israel: Investigating Natufian ritual feasting". Journal of Archaeological Science: Reports. 21: 783–793. Bibcode:2018JArSR..21..783L. doi:10.1016/j.jasrep.2018.08.008. ISSN 2352-409X.
  4. ^ Liu L, Wang J, Rosenberg D, Zhao H, Lengyel G, Nadel D (2018-10-01). "Fermented beverage and food storage in 13,000 y-old stone mortars at Raqefet Cave, Israel: Investigating Natufian ritual feasting". Journal of Archaeological Science: Reports. 21: 783–793. Bibcode:2018JArSR..21..783L. doi:10.1016/j.jasrep.2018.08.008. ISSN 2352-409X.
  5. ^ Hackmann TJ (2024-07-01). "The vast landscape of carbohydrate fermentation in prokaryotes". FEMS Microbiology Reviews. 48 (4): fuae016. doi:10.1093/femsre/fuae016. ISSN 0168-6445. PMC 11187502. PMID 38821505.

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