Consensus CDS Project

CCDS Project
Content
Description	Convergence towards a standard set of gene annotations
Contact
Research center	National Center for Biotechnology Information; European Bioinformatics Institute; University of California, Santa Cruz; Wellcome Trust Sanger Institute
Authors	Kim D. Pruitt
Primary citation	Pruitt KD, et al (2009)
Release date	2009
Access
Website	https://www.ncbi.nlm.nih.gov/projects/CCDS/CcdsBrowse.cgi
Miscellaneous
Version	CCDS Release 24

The Consensus Coding Sequence (CCDS) Project is a collaborative effort to maintain a dataset of protein-coding regions that are identically annotated on the human and mouse reference genome assemblies. The CCDS project tracks identical protein annotations on the reference mouse and human genomes with a stable identifier (CCDS ID), and ensures that they are consistently represented by the National Center for Biotechnology Information (NCBI), Ensembl, and UCSC Genome Browser.^[1] The integrity of the CCDS dataset is maintained through stringent quality assurance testing and on-going manual curation.^[2]

^ ^a ^b Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, Landrum MJ, Aken B, Ayling S, Baertsch R, Fernandez-Banet J, Cherry JL, Curwen V, Dicuccio M, Kellis M, Lee J, Lin MF, Schuster M, Shkeda A, Amid C, Brown G, Dukhanina O, Frankish A, Hart J, Maidak BL, Mudge J, Murphy MR, Murphy T, Rajan J, Rajput B, Riddick LD, Snow C, Steward C, Webb D, Weber JA, Wilming L, Wu W, Birney E, Haussler D, Hubbard T, Ostell J, Durbin R, Lipman D (2009). "The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes". Genome Res. 19 (7): 1316–23. doi:10.1101/gr.080531.108. PMC 2704439. PMID 19498102.
^ Harte, RA; Farrell, CM; Loveland, JE; Suner, MM; Wilming, L; Aken, B; Barrell, D; Frankish, A; Wallin, C; Searle, S; Diekhans, M; Harrow, J; Pruitt, KD (2012). "Tracking and coordinating an international curation effort for the CCDS project". Database. 2012: bas008. doi:10.1093/database/bas008. PMC 3308164. PMID 22434842.

[pmid19498102-1] Pruitt KD, Harrow J, Harte RA, Wallin C, Diekhans M, Maglott DR, Searle S, Farrell CM, Loveland JE, Ruef BJ, Hart E, Suner MM, Landrum MJ, Aken B, Ayling S, Baertsch R, Fernandez-Banet J, Cherry JL, Curwen V, Dicuccio M, Kellis M, Lee J, Lin MF, Schuster M, Shkeda A, Amid C, Brown G, Dukhanina O, Frankish A, Hart J, Maidak BL, Mudge J, Murphy MR, Murphy T, Rajan J, Rajput B, Riddick LD, Snow C, Steward C, Webb D, Weber JA, Wilming L, Wu W, Birney E, Haussler D, Hubbard T, Ostell J, Durbin R, Lipman D (2009). "The consensus coding sequence (CCDS) project: Identifying a common protein-coding gene set for the human and mouse genomes". Genome Res. 19 (7): 1316–23. doi:10.1101/gr.080531.108. PMC 2704439. PMID 19498102.

[Second-2] Harte, RA; Farrell, CM; Loveland, JE; Suner, MM; Wilming, L; Aken, B; Barrell, D; Frankish, A; Wallin, C; Searle, S; Diekhans, M; Harrow, J; Pruitt, KD (2012). "Tracking and coordinating an international curation effort for the CCDS project". Database. 2012: bas008. doi:10.1093/database/bas008. PMC 3308164. PMID 22434842.

[1]

[2]