Mean squared displacement

In statistical mechanics, the mean squared displacement (MSD, also mean square displacement, average squared displacement, or mean square fluctuation) is a measure of the deviation of the position of a particle with respect to a reference position over time. It is the most common measure of the spatial extent of random motion, and can be thought of as measuring the portion of the system "explored" by the random walker. In the realm of biophysics and environmental engineering, the Mean Squared Displacement is measured over time to determine if a particle is spreading slowly due to diffusion, or if an advective force is also contributing.[1] Another relevant concept, the variance-related diameter (VRD, which is twice the square root of MSD), is also used in studying the transportation and mixing phenomena in the realm of environmental engineering.[2] It prominently appears in the Debye–Waller factor (describing vibrations within the solid state) and in the Langevin equation (describing diffusion of a Brownian particle).

The MSD at time is defined as an ensemble average:

where N is the number of particles to be averaged, vector is the reference position of the -th particle, and vector is the position of the -th particle at time t.[3]

  1. ^ Tarantino, Nadine; Tinevez, Jean-Yves; Crowell, Elizabeth Faris; Boisson, Bertrand; Henriques, Ricardo; Mhlanga, Musa; Agou, Fabrice; Israël, Alain; Laplantine, Emmanuel (2014-01-20). "TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO–IKK supramolecular structures". J Cell Biol. 204 (2): 231–245. doi:10.1083/jcb.201307172. ISSN 0021-9525. PMC 3897181. PMID 24446482.
  2. ^ B., Fischer, Hugo (1979-01-01). Mixing in inland and coastal waters. Academic Press. ISBN 9780080511771. OCLC 983391285.{{cite book}}: CS1 maint: multiple names: authors list (link)
  3. ^ Frenkel, Daan & Smit, Berend. Understanding molecular simulation: From algorithms to applications. Academic Press, 196 (2nd Ed.), p. 97.

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