 | |
| Content | |
|---|---|
| Description | Database for biochemical reactions and their kinetic properties |
| Data types captured | Quantitative information on reaction dynamics |
| Organisms | all |
| Contact | |
| Research center | Heidelberger Institut für Theoretische Studien |
| Laboratory | Scientific Databases and Visualization |
| Release date | 2006 |
| Access | |
| Website | http://sabio.h-its.org |
| Web service URL | http://sabio.h-its.org/layouts/content/webservices.gsp |
| Miscellaneous | |
| License | http://sabio.h-its.org/layouts/content/termscondition.gsp |
| Curation policy | Curated database |
SABIO-RK (System for the Analysis of Biochemical Pathways - Reaction Kinetics) is a web-accessible database storing information about biochemical reactions and their kinetic properties.
SABIO-RK comprises a reaction-oriented representation of quantitative information on reaction dynamics based on a given selected publication. This comprises all available kinetic parameters together with their corresponding rate equations, as well as kinetic law and parameter types and experimental and environmental conditions under which the kinetic data were determined. Additionally, SABIO-RK contains information about the underlying biochemical reactions and pathways including their reaction participants, cellular location and detailed information about the enzymes catalysing the reactions.[1][2][3][4][5]
- ^ Wittig, U; Rey, M; Weidemann, A; Kania, R; Müller, W (4 January 2018). "SABIO-RK: an updated resource for manually curated biochemical reaction kinetics". Nucleic Acids Research. 46 (D1): D656 – D660. doi:10.1093/nar/gkx1065. PMC 5753344. PMID 29092055.
- ^ Wittig, U; Kania, R; Golebiewski, M; Rey, M; Shi, L; Jong, L; Algaa, E; Weidemann, A; Sauer-Danzwith, H; Mir, S; Krebs, O; Bittkowski, M; Wetsch, E; Rojas, I; Müller, W (January 2012). "SABIO-RK--database for biochemical reaction kinetics". Nucleic Acids Research. 40 (Database issue): D790-6. doi:10.1093/nar/gkr1046. PMC 3245076. PMID 22102587.
- ^ Rojas, I; Golebiewski, M; Kania, R; Krebs, O; Mir, S; Weidemann, A; Wittig, U (2007). "Storing and annotating of kinetic data". In Silico Biology. 7 (2 Suppl): S37–44. PMID 17822389.
- ^ Wittig, Ulrike; Golebiewski, Martin; Kania, Renate; Krebs, Olga; Mir, Saqib; Weidemann, Andreas; Anstein, Stefanie; Saric, Jasmin; Rojas, Isabel (2006). "SABIO-RK: Integration and Curation of Reaction Kinetics Data". Data Integration in the Life Sciences. Lecture Notes in Computer Science. Vol. 4075. pp. 94–103. doi:10.1007/11799511_9. ISBN 978-3-540-36593-8.
- ^ Müller W. In: Pfade im Informationsdschungel Spektrum der Wissenschaft, Spektrum Spezial: Datengetriebene Wissenschaft, December 2011
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